Transcriptomics and Expression Analysis in KBase

Expression Analysis

KBase’s transcriptomics and expression analysis tools enable researchers to align and assemble RNA-seq reads into transcriptomes, analyze patterns of gene expression and identify differentially expressed genes, and visualize expression data from microarray or RNA-seq platforms. Expression data can also be integrated with KBase’s metabolic modeling tools to compare empirical gene expression data with metabolic models to explore differences in biological behavior and composition.

For detailed information about the comparative genomics and phylogenetic analysis tools in KBase, see the app detail pages and tutorials for the relevant apps. For instructions on using the RNA-Seq apps, look here.