Filter JGI Data to Push to KBase

From the Genome Portal page, select the “Advanced Search” link at the top of the page.

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From the Genome Portal page, select the “Advanced Search” link at the top of the page.

In the JGI Genome Portal, the area under the search bar contains data filtering tools that enable the user to narrow the displayed results to the selected criteria. Several pull-down menus allow you to select the data you want to use. To filter the results for data that can be pushed to KBase, select “Microbial” under the Scientific Program dropdown, and click “Show All.”

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You can also search for a particular organism of interest, for example Chryseolinea serpens DSM 24574 shown in the table below:

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Currently, Push to KBase functionality is supported for Microbial reads and genome assemblies from these Product listings on JGI:

  • Microbial Annotated Finished, Isolate
  • Microbial Annotated Improved Draft, Isolate
  • Microbial Annotated Minimal Draft, Isolate
  • Microbial Annotated Minimal Draft, Single Cell