Display the P-value distribution of differentially expressed genes to filter an expression matrix based on P-value cutoff or number of features.
This method displays the P-value distribution of differentially expressed genes to filter an expression matrix based on P-value cutoff or number of features.
Description of filtering methods to do differential Expression:
- Log odds ratio is a statistical test that calculates the logarithm of the ratio of the odds for regulation to the odds against regulation to measure association between the variables.
- ANOVA (ANalysis Of VAriance) is a statistical test for measurement of heterogeneity of means by analysis of group variances.
Team members who developed & deployed algorithm in KBase: Shinjae Yoo, Fei He, Sunita Kumari, Priya Ranjan, Srividya Ramakrishnan, Jim Thomason, Vivek Kumar
For questions, e-mail [email protected]
App Specification:
https://github.com/sjyoo/coexpression/tree/77803912cdb5fb1ed2535add11ccaa04bcb678f3/ui/narrative/methods/expression_toolkit_view_p_value_distModule Commit: 77803912cdb5fb1ed2535add11ccaa04bcb678f3