Collapse Matrix - group and collapse amplicons by taxonomy
Collapse Matrix
Create new Amplicon Matrix with amplicons grouped by taxonomy (higher-level OTUs)
Thanks to Pamela Weisenhorn and Kathleen Beilsmith for designing the essential behavior of this app.
Related Publications
- Jari Oksanen, F. Guillaume Blanchet, Michael Friendly, Roeland Kindt, Pierre Legendre, Dan McGlinn, Peter R. Minchin, R. B. O'Hara, Gavin L. Simpson, Peter Solymos, M. Henry H. Stevens, Eduard Szoecs and Helene Wagner (2019). vegan: Community Ecology Package. R package version 2.5-6. https://CRAN.R-project.org/package=vegan ,
- Hurlbert, S.H. (1971). The nonconcept of species diversity: a critique and alternative parameters. Ecology 52, 577--586. ,
- Heck, K.L., van Belle, G. & Simberloff, D. (1975). Explicit calculation of the rarefaction diversity measurement and the determination of sufficient sample size. Ecology 56 ,
App Specification:
https://github.com/kbaseapps/GenericsAPI/tree/2d68b13be4bf7278817cbfef949777a03ea1bda7/ui/narrative/methods/collapse_matrixModule Commit: 2d68b13be4bf7278817cbfef949777a03ea1bda7