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Annotate Metagenome Assembly and Re-annotate Metagenomes with Prokka(v1.12)
By: slebras

Launch

Annotate Metagenome Assembly and Re-annotate Metagenomes with Prokka annotation pipeline.

This is a KBase wrapper for the Prokka annotation pipeline.

Prokka is a software tool for the rapid annotation of prokaryotic genomes. A typical 4Mbp genome can be fully annotated in less than 20 minutes.

For rRNA prediction this app currently uses Barrnap (written by the author of Prokka and recommended if you prefer speed over absolute accuracy).

See more information at https://github.com/kbaseapps/ProkkaAnnotation/blob/master/README.rst

Prokka version: 1.12

Barrnap version: 0.8

Related Publications


App Specification:

https://github.com/kbaseapps/ProkkaAnnotation/tree/d2ac4a05646509b4a8df99d12f93db9c321e1027/ui/narrative/methods/annotate_metagenome

Module Commit: d2ac4a05646509b4a8df99d12f93db9c321e1027