Annotate Metagenome Assembly with Prokka annotation pipeline.
This is a KBase wrapper for the Prokka annotation pipeline.
Prokka is a software tool for the rapid annotation of prokaryotic genomes. A typical 4Mbp genome can be fully annotated in less than 20 minutes.
For rRNA prediction this app currently uses Barrnap (written by the author of Prokka and recommended if you prefer speed over absolute accuracy).
See more information at https://github.com/kbaseapps/ProkkaAnnotation/blob/master/README.rst
Prokka version: 1.14.5
Barrnap version: 0.8
Related Publications
- Seemann T. Prokka: rapid prokaryotic genome annotation. Bioinformatics. 2014;30: 2068 2069. doi:10.1093/bioinformatics/btu153 , https://www.ncbi.nlm.nih.gov/pubmed/24642063
App Specification:
https://github.com/kbaseapps/ProkkaAnnotation/tree/1967e07320b1898db0c6998bb4549b7f1187e5a8/ui/narrative/methods/annotate_metagenomeModule Commit: 1967e07320b1898db0c6998bb4549b7f1187e5a8