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Curated Blast (M Price)



Run Morgan Price's program, "Curated Blast", on a Genome in KBase.

Given a genome and a query, find characterized proteins whose descriptions match the query, and then search the genome for homologs of those proteins. You can use any Genome object. - This is the KBase wrapper for Curated BLAST -

For example, queries could be "perchlorate", "manganate". Genomes could be any Genome object, eg "Shewanella_amazonensis_SB2B".

Uses MMseqs2 to run BLAST searches.

Link to Curated Blast on Github

Related Publications

App Specification:

Module Commit: 8a19a8ad23fad0840d7a3e3a4cf78833748d1e29