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Run Model Characterization


By: chenry


Runs a variety of algorithms on a model to characterize its quality, pathways, and auxotrophy.

This app uses the input model to predict ATP production, auxotrophy, gap counts, and the distribution of genes across metabolic pathways.

Team members who developed & deployed algorithm in KBase: Chris Henry, Janaka Edirisinghe, Jose Faria and Filipe Liu. For questions please contact us.

Related Publications

App Specification:

Module Commit: 8baa9633d3a091e67108217a44eab8f836ed7d36