Create a text info file for an GenomeComparison Object.
This intended purpose of this App is to produce a downloadable TEXT file about an object.
Most KBase data objects already have some type of viewable HTML table, either as output from an App or by dragging the object onto the Narrative. This App serves a different purpose. This App creates data files that are downloadable and used with local tools such as Excel or informatic scripts.
This App creates files on the contents of a GenomeComparison object. A Summary section has a preview of the full output. It is intended to be a preview of the downloadable file. If the file is tab or comma delimited, it may appear misaligned on the screen but readable by a computer script. The HTML link opens a new tab with the full output. The link for downloading the files is in the Files section of the output.
The inputs are:
- The KBase Genome Comparison object (uploaded or output from an app)
The outputs are:
- A Link section with a link to the requested file that can be opened in another browser tab.
- Two downloadable files in the Files section. One for tab-delimited and one for comma-delimited. The files have the following sections:
- An Overview Section
- A List of the Genomes in the Comparison
- A list of the Families in the Comparison
- A list of the Genes and Genomes in each Family
- A list of the Functions in the Comparison
- A list of the Genes and Genomes in each Function
Related Publications
- Arkin AP, Cottingham RW, Henry CS, Harris NL, Stevens RL, Maslov S, et al. KBase: The United States Department of Energy Systems Biology Knowledgebase. Nature Biotechnology. 2018;36: 566. doi: 10.1038/nbt.4163 , https://www.nature.com/articles/nbt.4163
App Specification:
https://github.com/kbaseapps/kb_ObjectInfo/tree/f41cd0b3c9767eecc436a8474806d8c639ad3f8a/ui/narrative/methods/genomecomp_reportModule Commit: f41cd0b3c9767eecc436a8474806d8c639ad3f8a