Create text info files based on a Multiple Sequence Alignment data object
This intended purpose of this app is to produce a downloadable TEXT file about an object.
Most KBase data objects already have some type of pretty HTML table, either as output from an app or by dragging the object onto the narrative. This app serves a different purpose. This app creates one or more files that are downloadable and used with local tools such as Excel or computer scripts.
This app creates a file on the contents of a Multiple Sequence Alignment. A Summary section has a preview of the output. It is intended to be a preview of the downloadable file. If the file is tab or comma delimited, it may appear misaligned on the screen but readable by a computer script. The HTML link opens a new tab with the full output. The link for downloading the files is in the Files section of the output.
The inputs are:
- The KBase Multiple Sequence Alignment object (output from several app)
The output consists of 4 columns:
- The Multiple Sequence Alignment object
Related Publications
- Arkin AP, Cottingham RW, Henry CS, Harris NL, Stevens RL, Maslov S, et al. KBase: The United States Department of Energy Systems Biology Knowledgebase. Nature Biotechnology. 2018;36: 566. doi: 10.1038/nbt.4163 , https://www.nature.com/articles/nbt.4163
App Specification:
https://github.com/kbaseapps/kb_ObjectInfo/tree/f41cd0b3c9767eecc436a8474806d8c639ad3f8a/ui/narrative/methods/msa_reportModule Commit: f41cd0b3c9767eecc436a8474806d8c639ad3f8a