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Proteome Comparison Object Info
kb_ObjectInfo

v.1.2.1

By: landml

Launch

Create text info files based on a Proteome Comparison data object

This intended purpose of this app is to produce a downloadable TEXT file about an object.

Most KBase data objects already have some type of pretty HTML table, either as output from an app or by dragging the object onto the narrative. This app serves a different purpose. This app creates one or more files that are downloadable and used with local tools such as Excel or computer scripts.

This app creates a file on the contents of a ProteomeComparison. This object is created with the app Compare Two Proteomes. A Summary section has a preview of the full output. It is intended to be a preview of the downloadable file. If the file is tab or comma delimited, it may appear misaligned on the screen but readable by a computer script. The HTML link opens a new tab with the full output. The link for downloading the files is in the Files section of the output.

The inputs are:

The output consists of 4 columns:

  1. The gene name from genome 1
  2. The gene name from genome 2
  3. The bit score of the hit
  4. The bi-directional best hit percentage

Related Publications


App Specification:

https://github.com/kbaseapps/kb_ObjectInfo/tree/e9d2566b748fd735590f131da284ca44aaf5aefb/ui/narrative/methods/protcomp_report

Module Commit: e9d2566b748fd735590f131da284ca44aaf5aefb