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Assess Reads Alignment Quality using Qualimap - v2.2.1


By: msneddon


Display BAM quality control information for a ReadsAlignment or ReadsAlignmentSet using QualiMap.

This App runs QualiMap to produce BAM QC metrics and plots a report for an Alignment(Set).

The output report can be downloaded and includes a summary of the number of mapped reads, coverage, GC-content, mapping quality, etc. in tabular format. It also contains various plots such as PCA and coverage histograms to visualize the tabular data.

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App Specification:

Module Commit: 1efacd253aa0f3faa8e8183343f66366eccb6c7a