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Assess Reads Alignment Quality using Qualimap - v2.2.1
kb_QualiMap

v.1.1.1

By: msneddon

Launch

Display BAM quality control information for a ReadsAlignment or ReadsAlignmentSet using QualiMap.

This App runs QualiMap to produce BAM QC metrics and plots a report for an Alignment(Set).

The output report can be downloaded and includes a summary of the number of mapped reads, coverage, GC-content, mapping quality, etc. in tabular format. It also contains various plots such as PCA and coverage histograms to visualize the tabular data.

Related Publications


App Specification:

https://github.com/kbaseapps/kb_QualiMap/tree/d84e32a308bcc045f17ef551f9b319dc42601837/ui/narrative/methods/run_QualiMap

Module Commit: d84e32a308bcc045f17ef551f9b319dc42601837