Create differential expression matrix based on a given threshold cutoff
This App uses the transcripts for two or more samples obtained from either Cufflinks or StringTie to calculate gene and transcript levels in more than one condition and finds significant changes in the expression levels.
Related Publications
- Love MI, Huber W, Anders S. Moderated estimation of fold change and dispersion for RNA-seq data with DESeq2. Genome Biology. 2014;15: 550. doi:10.1186/s13059-014-0550-8 , https://genomebiology.biomedcentral.com/articles/10.1186/s13059-014-0550-8
App Specification:
https://github.com/kbaseapps/kb_deseq/tree/f3460e40ebb17b0353204c34aaf24683aeae7717/ui/narrative/methods/run_DESeq2Module Commit: f3460e40ebb17b0353204c34aaf24683aeae7717