Find Gene Set Interconnectivity using Cross Validation with RWRtools CV
kb_djornl
v.1.0.3
By:
dakota
Launch
RWRtools CV (Cross Validation) performs cross validation on a single gene set, finding the RWR rank of the left-out genes.
RWRtools CV (Cross Validation) performs cross validation on a single
gene set, finding the Random Walk with Restart (RWR) rank of the left-out
genes. Cross validation methods include k-fold (default method, k = 5),
leave-one-out (loo) (leave only one gene from the gene set out
and use other genes to find its rank), or singletons (one
gene is used to find the ranks of all other genes in the gene set).
Descriptions of provided multiplexes can be found
"here".
A demo Narrative for both RWRtools apps can be found
here.
App Specification:
https://github.com/kbaseapps/kb_djornl//tree/3b136023d9f6fa7dfb6e18af94bc362e5ca57809/ui/narrative/methods/run_rwr_cvModule Commit: 3b136023d9f6fa7dfb6e18af94bc362e5ca57809