RWRtools LOE (Lines of Evidence) uses RWR to rank genes in the network starting from a Feature Set.
RWRtools LOE (Lines of Evidence) performs Random Walk with Restart
(RWR) from one geneset to rank other genes in the network using multiple
lines of biological evidence. This app has two possible functions. Given
one geneset of seeds, rankings for all other genes in the network will be
returned. Given a second geneset of genes to be queried, rankings for just
the genes in that geneset will be returned. This can be used to build
multiple lines of evidence from the various input networks to relate the
two gene sets. Descriptions of provided multiplexes can be found
"here".
A demo Narrative for both RWRtools apps can be found
here.
App Specification:
https://github.com/kbaseapps/kb_djornl//tree/3b136023d9f6fa7dfb6e18af94bc362e5ca57809/ui/narrative/methods/run_rwr_loeModule Commit: 3b136023d9f6fa7dfb6e18af94bc362e5ca57809