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GBLOCKS Trim Multiple Sequence Alignment (MSA) - v0.91b
kb_gblocks

v.1.0.4

By: dylan

Launch

Trim a Multiple Sequence Alignment (MSA) to remove hypervariable (gappy) regions with Gblocks

Gblocks 0.91b from http://molevol.cmima.csic.es/castresana/Gblocks.html

Implemented for KBase by Dylan Chivian (DCChivian@lbl.gov)


This method trims Multiple Sequence Alignments (MSAs) to capture the conserved blocks that may be more reliable regions from which to compare evolutionary rates, such as for tree building. It uses the method Gblocks.

Related Publications


App Specification:

https://github.com/kbaseapps/kb_gblocks/tree/2f1824e463b0fe54cb2da6766d779d8a37c14298/ui/narrative/methods/run_Gblocks

Module Commit: 2f1824e463b0fe54cb2da6766d779d8a37c14298