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GBLOCKS Trim Multiple Sequence Alignment (MSA) - v0.91b
kb_gblocks

v.1.0.8

By: dylan

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Trim a Multiple Sequence Alignment (MSA) to remove hypervariable (gappy) regions with Gblocks

This method trims Multiple Sequence Alignments (MSAs) to capture the conserved blocks that may be more reliable regions from which to compare evolutionary rates, such as for tree building. It uses the method Gblocks.


Tool Source:

Gblocks 0.91b is downloaded from https://www.biologiaevolutiva.org/jcastresana/Gblocks.html


Team members who implemented algorithm in KBase: Dylan Chivian. For questions, please contact us.

Please cite:

Related Publications


App Specification:

https://github.com/kbaseapps/kb_gblocks/tree/8bfea57aa50c552085b9de8226fae84bddd29e51/ui/narrative/methods/run_Gblocks

Module Commit: 8bfea57aa50c552085b9de8226fae84bddd29e51