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GTDB-Tk classify



Obtain objective taxonomic assignments for bacterial and archaeal genomes based on the Genome Taxonomy Database (GTDB) ver 1.1.0


GTDB-Tk v1.1.0 is a software toolkit for assigning objective taxonomic classifications to bacterial and archaeal genomes. It is designed to work with recent advances that allow hundreds or thousands of metagenome-assembled genomes (MAGs) to be obtained directly from environmental samples. It can also be applied to isolate and single-cell genomes.


This app is using gtdbtk release 89 data

Data Release Notes

About GTDB

The Genome Taxonomy Database (GTDB) is constructed from RefSeq and Genbank genomes, and releases are indexed to RefSeq releases. All genomes are quality controlled using CheckM and those statistics can be found on the GTDB website.


GTDB-Tk is described in:

The Genome Taxonomy Database (GTDB) is described in:

We also strongly encourage you to cite the following 3rd party dependencies:

Related Publications

App Specification:

Module Commit: 586a7c3426ffc21304a5e7d42285083fc043f77a