Build Species Tree for your Microbial Genomes, optionally including Tree Skeleton of Phylum Exemplars
This App allows the user to build a microbial SpeciesTree of their genomes, with options to include Phylum exemplar genomes to act as a skeleton.
Team members who developed & deployed algorithm in KBase: Dylan Chivian, based on the Insert Genomes into Species Tree App developed by Paramvir Dehal and Roman Sutormin. For questions, please contact us.
Related Publications
- Arkin AP, Cottingham RW, Henry CS, Harris NL, Stevens RL, Maslov S, et al. KBase: The United States Department of Energy Systems Biology Knowledgebase. Nature Biotechnology. 2018;36: 566. doi: 10.1038/nbt.4163 , https://www.nature.com/articles/nbt.4163
App Specification:
https://github.com/kbaseapps/kb_phylogenomics/tree/7a7953cfae374968499ac49d7716ce9bc99b2ca0/ui/narrative/methods/build_microbial_speciestreeModule Commit: 7a7953cfae374968499ac49d7716ce9bc99b2ca0