Allows users to view a SpeciesTree object.
Currently KBase supports the creation of gene and Species Trees. This App displays the selected tree as a static image and provides links to download the image in PNG and PDF formats. It also provides links to download file containing the NEWICK representation of the tree (with identifiers or labels). There is also button ( View report in separate window ) and a link to open a new web page with just the image of the tree.
Team members who developed & deployed algorithm in KBase: Dylan Chivian. For questions, please contact us.
Related Publications
- Arkin AP, Cottingham RW, Henry CS, Harris NL, Stevens RL, Maslov S, et al. KBase: The United States Department of Energy Systems Biology Knowledgebase. Nature Biotechnology. 2018;36: 566. doi: 10.1038/nbt.4163 , https://www.nature.com/articles/nbt.4163
App Specification:
https://github.com/kbaseapps/kb_phylogenomics/tree/aed8564fcf4c6e8a3e94f6546715496e6fffbd84/ui/narrative/methods/view_treeModule Commit: aed8564fcf4c6e8a3e94f6546715496e6fffbd84