Assemble Reads with Unicycler - v0.4.8
Assemble reads using the Unicycler assembler.
This is a KBase wrapper for Unicycler, an assembly pipeline for bacterial genomes. Unicycler can assemble Illumina-only read sets where it functions as a SPAdes-optimiser. It can also assembly long-read-only sets (PacBio or Nanopore) where it runs a miniasm+Racon pipeline. For the best possible assemblies, give it both Illumina reads and long reads, and it will conduct a hybrid assembly.
More details on Unicycler can be found in publication  at the bottom of this App detail page, and details of how it is used to assemble bacterial genomes can be found in publication .
-  Wick RR, Judd LM, Gorrie CL, Holt KE. Unicycler: resolving bacterial genome assemblies from short and long sequencing reads. PLoS Comput Biol 2017. doi: 10.1371/journal.pcbi.1005595 , http://journals.plos.org/ploscompbiol/article?id=10.1371/journal.pcbi.1005595
-  Wick RR, Judd LM, Gorrie CL, Holt KE. Completing bacterial genome assemblies with multiplex MinION sequencing. Microb Genom 2017. doi: 10.1099/mgen.0.000132 , https://www.microbiologyresearch.org/content/journal/mgen/10.1099/mgen.0.000132
Module Commit: 0a192937c92f1e6920306bb4d1bd437ced9f55c0