Viral cluster automatic cluster taxonomy
vConTACT2 (Viral CONTigs Automatic Clustering and Taxonomy) is a tool to perform guilt-by-contig-association automatic classification of viral contigs. See the publication link listed below for more information on the tool. Terminology used in this app: MCL=Markov cluster, PC=protein cluser, VC=Viral cluster, ClusterONE=Clustering with Overlapping Neighborhood Expansion.
Related Publications
- Bin Jang, H., Bolduc, B., Zablocki, O., Kuhn, J. H., Roux, S., Adriaenssens, E. M., Sullivan, M. B. Taxonomic assignment of uncultivated prokaryotic virus genomes is enabled by gene-sharing networks. Nature Biotechnology. 2019;37(6): 632 639. https://doi.org/10.1038/s41587-019-0100-8 , https://www.ncbi.nlm.nih.gov/pubmed/28480138
App Specification:
https://github.com/bolduc/vcontact/tree/36c0cc1bd3e483552afadb5ae6d682ea117fce9c/ui/narrative/methods/vcontactModule Commit: 36c0cc1bd3e483552afadb5ae6d682ea117fce9c