KEY
Amino  Acids  and  Derivatives	Alanine_biosynthesis	Alanine biosynthesis
	Arginine_Biosynthesis_extended	Arginine Biosynthesis extended
	Arginine_Deiminase_Pathway	Arginine Deiminase Pathway
	Arginine_and_Ornithine_Degradation	Arginine and Ornithine Degradation
	Aromatic_amino_acid_degradation	Aromatic amino acid degradation
	Aromatic_amino_acid_interconversions_wit*	Aromatic amino acid interconversions with aryl acids
	Bacilysin_biosynthesis	Bacilysin biosynthesis
	Branched-Chain_Amino_Acid_Biosynthesis	Branched-Chain Amino Acid Biosynthesis
	Chorismate:_Intermediate_for_synthesis_o*	Chorismate: Intermediate for synthesis of PAPA antibiotics, PABA, anthranilate, 3-hydroxyanthranilate and more.
	Chorismate_Synthesis	Chorismate Synthesis
	Common_Pathway_For_Synthesis_of_Aromatic*	Common Pathway For Synthesis of Aromatic Compounds (DAHP synthase to chorismate)
	Cyanophycin_Metabolism	Cyanophycin Metabolism
	Cysteine_Biosynthesis	Cysteine Biosynthesis
	Glutamate_dehydrogenases	Glutamate dehydrogenases
	Glutamine,_Glutamate,_Aspartate_and_Aspa*	Glutamine, Glutamate, Aspartate and Asparagine Biosynthesis
	Glutamine_synthetases	Glutamine synthetases
	Glycine_Biosynthesis	Glycine Biosynthesis
	Glycine_and_Serine_Utilization	Glycine and Serine Utilization
	Glycine_cleavage_system	Glycine cleavage system
	HMG_CoA_Synthesis	HMG CoA Synthesis
	Histidine_Biosynthesis	Histidine Biosynthesis
	Histidine_Degradation	Histidine Degradation
	Isoleucine_degradation	Isoleucine degradation
	Ketoisovalerate_oxidoreductase	Ketoisovalerate oxidoreductase
	L-2-amino-thiazoline-4-carboxylic_acid-L*	L-2-amino-thiazoline-4-carboxylic acid-Lcysteine conversion
	Leucine_Biosynthesis	Leucine Biosynthesis
	Leucine_Degradation_and_HMG-CoA_Metaboli*	Leucine Degradation and HMG-CoA Metabolism
	Lysine_Biosynthesis_DAP_Pathway	Lysine Biosynthesis DAP Pathway
	Lysine_degradation	Lysine degradation
	Methionine_Biosynthesis	Methionine Biosynthesis
	Methionine_Degradation	Methionine Degradation
	Methionine_Salvage	Methionine Salvage
	Phenylalanine_and_Tyrosine_Branches_from*	Phenylalanine and Tyrosine Branches from Chorismate
	Polyamine_Metabolism	Polyamine Metabolism
	Proline,_4-hydroxyproline_uptake_and_uti*	Proline, 4-hydroxyproline uptake and utilization
	Proline_Synthesis	Proline Synthesis
	Serine_Biosynthesis	Serine Biosynthesis
	Threonine_anaerobic_catabolism_gene_clus*	Threonine anaerobic catabolism gene cluster
	Threonine_and_Homoserine_Biosynthesis	Threonine and Homoserine Biosynthesis
	Threonine_degradation	Threonine degradation
	Tryptophan_synthesis	Tryptophan synthesis
	Urea_decomposition	Urea decomposition
	Valine_degradation	Valine degradation
Carbohydrates	2-Ketogluconate_Utilization	2-Ketogluconate Utilization
	2-methylcitrate_to_2-methylaconitate_met*	2-methylcitrate to 2-methylaconitate metabolism cluster
	Acetoin,_butanediol_metabolism	Acetoin, butanediol metabolism
	Acetyl-CoA_fermentation_to_Butyrate	Acetyl-CoA fermentation to Butyrate
	Alpha-acetolactate_operon	Alpha-acetolactate operon
	Beta-Glucoside_Metabolism	Beta-Glucoside Metabolism
	Butanol_Biosynthesis	Butanol Biosynthesis
	CO2_uptake,_carboxysome	CO2 uptake, carboxysome
	Calvin-Benson_cycle	Calvin-Benson cycle
	Carboxysome	Carboxysome
	Chitin_and_N-acetylglucosamine_utilizati*	Chitin and N-acetylglucosamine utilization
	D-Galacturonate_and_D-Glucuronate_Utiliz*	D-Galacturonate and D-Glucuronate Utilization
	D-Sorbitol(D-Glucitol)_and_L-Sorbose_Uti*	D-Sorbitol(D-Glucitol) and L-Sorbose Utilization
	D-Tagatose_and_Galactitol_Utilization	D-Tagatose and Galactitol Utilization
	D-allose_utilization	D-allose utilization
	D-galactarate,_D-glucarate_and_D-glycera*	D-galactarate, D-glucarate and D-glycerate catabolism
	D-galactonate_catabolism	D-galactonate catabolism
	D-gluconate_and_ketogluconates_metabolism	D-gluconate and ketogluconates metabolism
	D-ribose_utilization	D-ribose utilization
	Deoxyribose_and_Deoxynucleoside_Cataboli*	Deoxyribose and Deoxynucleoside Catabolism
	Di-Inositol-Phosphate_biosynthesis	Di-Inositol-Phosphate biosynthesis
	Dihydroxyacetone_kinases	Dihydroxyacetone kinases
	Entner-Doudoroff_Pathway	Entner-Doudoroff Pathway
	Erythritol_utilization	Erythritol utilization
	Ethanolamine_utilization	Ethanolamine utilization
	Fermentations:_Lactate	Fermentations: Lactate
	Fermentations:_Mixed_acid	Fermentations: Mixed acid
	Formaldehyde_assimilation:_Ribulose_mono*	Formaldehyde assimilation: Ribulose monophosphate pathway
	Fructooligosaccharides(FOS)_and_Raffinos*	Fructooligosaccharides(FOS) and Raffinose Utilization
	Fructose_utilization	Fructose utilization
	Glycerol_and_Glycerol-3-phosphate_Uptake*	Glycerol and Glycerol-3-phosphate Uptake and Utilization
	Glycerol_fermenation_to_1,3-propanediol	Glycerol fermenation to 1,3-propanediol
	Glycogen_metabolism	Glycogen metabolism
	Glycolate,_glyoxylate_interconversions	Glycolate, glyoxylate interconversions
	Glycolysis_and_Gluconeogenesis	Glycolysis and Gluconeogenesis
	Glycolysis_and_Gluconeogenesis,_includin*	Glycolysis and Gluconeogenesis, including Archaeal enzymes
	Hexose_Phosphate_Uptake_System	Hexose Phosphate Uptake System
	Inositol_catabolism	Inositol catabolism
	Isobutyryl-CoA_to_Propionyl-CoA_Module	Isobutyryl-CoA to Propionyl-CoA Module
	L-Arabinose_utilization	L-Arabinose utilization
	L-ascorbate_utilization_(and_related_gen*	L-ascorbate utilization (and related gene clusters)
	L-fucose_utilization	L-fucose utilization
	L-fucose_utilization_temp	L-fucose utilization temp
	L-rhamnose_utilization	L-rhamnose utilization
	Lactate_utilization	Lactate utilization
	Lacto-N-Biose_I_and_Galacto-N-Biose_Meta*	Lacto-N-Biose I and Galacto-N-Biose Metabolic Pathway
	Lactose_and_Galactose_Uptake_and_Utiliza*	Lactose and Galactose Uptake and Utilization
	Lactose_utilization	Lactose utilization
	Malonate_decarboxylase	Malonate decarboxylase
	Maltose_and_Maltodextrin_Utilization	Maltose and Maltodextrin Utilization
	Mannitol_Utilization	Mannitol Utilization
	Mannose_Metabolism	Mannose Metabolism
	Melibiose_Utilization	Melibiose Utilization
	Methanogenesis	Methanogenesis
	Methanogenesis_from_methylated_compounds	Methanogenesis from methylated compounds
	Methylcitrate_cycle	Methylcitrate cycle
	Methylglyoxal_Metabolism	Methylglyoxal Metabolism
	N-Acetyl-Galactosamine_and_Galactosamine*	N-Acetyl-Galactosamine and Galactosamine Utilization
	Neotrehalosadiamine_(NTD)_Biosynthesis_O*	Neotrehalosadiamine (NTD) Biosynthesis Operon
	One-carbon_metabolism_by_tetrahydropteri*	One-carbon metabolism by tetrahydropterines
	Pentose_phosphate_pathway	Pentose phosphate pathway
	Photorespiration_(oxidative_C2_cycle)	Photorespiration (oxidative C2 cycle)
	Predicted_carbohydrate_hydrolases	Predicted carbohydrate hydrolases
	Propanediol_utilization	Propanediol utilization
Propionate-CoA_to_Succinate_Module	Propionate-CoA to Succinate Module
Propionyl-CoA_to_Succinyl-CoA_Module	Propionyl-CoA to Succinyl-CoA Module
Pyruvate:ferredoxin_oxidoreductase	Pyruvate:ferredoxin oxidoreductase
Pyruvate_Alanine_Serine_Interconversions	Pyruvate Alanine Serine Interconversions
Pyruvate_metabolism_I:_anaplerotic_react*	Pyruvate metabolism I: anaplerotic reactions, PEP
Pyruvate_metabolism_II:_acetyl-CoA,_acet*	Pyruvate metabolism II: acetyl-CoA, acetogenesis from pyruvate
Ribitol,_Xylitol,_Arabitol,_Mannitol_and*	Ribitol, Xylitol, Arabitol, Mannitol and Sorbitol utilization
Serine-glyoxylate_cycle	Serine-glyoxylate cycle
Sucrose_utilization	Sucrose utilization
Sucrose_utilization_Shewanella	Sucrose utilization Shewanella
TCA_Cycle	TCA Cycle
Trehalose_Biosynthesis	Trehalose Biosynthesis
Trehalose_Uptake_and_Utilization	Trehalose Uptake and Utilization
Tricarballylate_Utilization	Tricarballylate Utilization
Unknown_sugar_utilization_(cluster_yphAB*	Unknown sugar utilization (cluster yphABCDEFG)
Xylose_utilization	Xylose utilization
Cell  Division  and  Cell  Cycle	Bacterial_Cytoskeleton	Bacterial Cytoskeleton
	Control_of_cell_elongation_-_division_cy*	Control of cell elongation - division cycle in Bacilli
	Cyanobacterial_Circadian_Clock	Cyanobacterial Circadian Clock
	Heterocyst_formation_in_cyanobacteria	Heterocyst formation in cyanobacteria
	Macromolecular_synthesis_operon	Macromolecular synthesis operon
	MukBEF_Chromosome_Condensation	MukBEF Chromosome Condensation
	Two_cell_division_clusters_relating_to_c*	Two cell division clusters relating to chromosome partitioning
	YgjD_and_YeaZ	YgjD and YeaZ
Cell  Wall  and  Capsule	Alginate_metabolism	Alginate metabolism
	CMP-N-acetylneuraminate_Biosynthesis	CMP-N-acetylneuraminate Biosynthesis
	Capsular_Polysaccharide_(CPS)_of_Campylo*	Capsular Polysaccharide (CPS) of Campylobacter
	Capsular_heptose_biosynthesis	Capsular heptose biosynthesis
	Capsular_surface_virulence_antigen_loci	Capsular surface virulence antigen loci
	Colanic_acid_biosynthesis	Colanic acid biosynthesis
	D-Alanyl_Lipoteichoic_Acid_Biosynthesis	D-Alanyl Lipoteichoic Acid Biosynthesis
	KDO2-Lipid_A_biosynthesis	KDO2-Lipid A biosynthesis
	LOS_core_oligosaccharide_biosynthesis	LOS core oligosaccharide biosynthesis
	Lipid_A-Ara4N_pathway_(_Polymyxin_resist*	Lipid A-Ara4N pathway ( Polymyxin resistance )
	Lipid_A_modifications	Lipid A modifications
	Lipopolysaccharide-related_cluster_in_Al*	Lipopolysaccharide-related cluster in Alphaproteobacteria
	O-Methyl_Phosphoramidate_Capsule_Modific*	O-Methyl Phosphoramidate Capsule Modification in Campylobacter
	Peptidoglycan_Biosynthesis	Peptidoglycan Biosynthesis
	Phosphorylcholine_incorporation_in_LPS	Phosphorylcholine incorporation in LPS
	Polysaccharide_deacetylases	Polysaccharide deacetylases
	Pseudaminic_Acid_Biosynthesis	Pseudaminic Acid Biosynthesis
	Rhamnose_containing_glycans	Rhamnose containing glycans
	Serotype_determining_Capsular_polysaccha*	Serotype determining Capsular polysaccharide biosynthesis in Staphylococcus
	Sialic_Acid_Metabolism	Sialic Acid Metabolism
	Teichoic_and_lipoteichoic_acids_biosynth*	Teichoic and lipoteichoic acids biosynthesis
	Teichuronic_acid_biosynthesis	Teichuronic acid biosynthesis
	UDP-N-acetylmuramate_from_Fructose-6-pho*	UDP-N-acetylmuramate from Fructose-6-phosphate Biosynthesis
	Xanthan_Exopolysaccharide_Biosynthesis_a*	Xanthan Exopolysaccharide Biosynthesis and Export
	YjeE	YjeE
	dTDP-rhamnose_synthesis	dTDP-rhamnose synthesis
	linker_unit-arabinogalactan_synthesis	linker unit-arabinogalactan synthesis
	mycolic_acid_synthesis	mycolic acid synthesis
Clustering-based  subsystems	Bacterial_Cell_Division	Bacterial Cell Division
	Bacterial_RNA-metabolizing_Zn-dependent_*	Bacterial RNA-metabolizing Zn-dependent hydrolases
	CBSS-214092.1.peg.3450	CBSS-214092.1.peg.3450
	CBSS-261594.1.peg.2640	CBSS-261594.1.peg.2640
	CBSS-262316.1.peg.2929	CBSS-262316.1.peg.2929
	CBSS-262719.3.peg.410	CBSS-262719.3.peg.410
	CBSS-343509.6.peg.2644	CBSS-343509.6.peg.2644
	CBSS-562.2.peg.5158_SK3_including	CBSS-562.2.peg.5158 SK3 including
	Cluster-based_Subsystem_Grouping_Hypothe*	Cluster-based Subsystem Grouping Hypotheticals - perhaps Proteosome Related
	Conenzyme_B12_related_Hypothetical:_Clus*	Conenzyme B12 related Hypothetical: Clusters with cobST
	Conserved_gene_cluster_associated_with_M*	Conserved gene cluster associated with Met-tRNA formyltransferase
	LMPTP_YfkJ_cluster	LMPTP YfkJ cluster
	LMPTP_YwlE_cluster	LMPTP YwlE cluster
	NusA-TFII_Cluster	NusA-TFII Cluster
	PA0057_cluster	PA0057 cluster
	Putative_hemin_transporter	Putative hemin transporter
	Putative_sulfate_assimilation_cluster	Putative sulfate assimilation cluster
	Spore_Coat	Spore Coat
	Type_III_secretion_systems,_extended	Type III secretion systems, extended
	YeiH	YeiH
Cofactors,  Vitamins,  Prosthetic  Groups,  Pigments	Bilin_Biosynthesis	Bilin Biosynthesis
	Biotin_biosynthesis	Biotin biosynthesis
	Chlorophyll_Biosynthesis	Chlorophyll Biosynthesis
	Chlorophyll_Degradation	Chlorophyll Degradation
	Cobalamin_synthesis	Cobalamin synthesis
	Coenzyme_A_Biosynthesis	Coenzyme A Biosynthesis
	Coenzyme_B12_biosynthesis	Coenzyme B12 biosynthesis
	Coenzyme_B_synthesis	Coenzyme B synthesis
	Coenzyme_F420_synthesis	Coenzyme F420 synthesis
	Coenzyme_PQQ_synthesis	Coenzyme PQQ synthesis
	Experimental_tye	Experimental tye
	Flavodoxin	Flavodoxin
	Folate_Biosynthesis	Folate Biosynthesis
	Heme_and_Siroheme_Biosynthesis	Heme and Siroheme Biosynthesis
	Heme_biosynthesis_orphans	Heme biosynthesis orphans
	Lipoic_acid_metabolism	Lipoic acid metabolism
	Menaquinone_Biosynthesis_via_Futalosine	Menaquinone Biosynthesis via Futalosine
	Menaquinone_and_Phylloquinone_Biosynthes*	Menaquinone and Phylloquinone Biosynthesis
	Molybdenum_cofactor_biosynthesis	Molybdenum cofactor biosynthesis
	NAD_and_NADP_cofactor_biosynthesis_global	NAD and NADP cofactor biosynthesis global
	NAD_regulation	NAD regulation
	Plastoquinone_Biosynthesis	Plastoquinone Biosynthesis
	PnuC-like_transporters	PnuC-like transporters
	Pterin_biosynthesis	Pterin biosynthesis
	Pyridoxin_(Vitamin_B6)_Biosynthesis	Pyridoxin (Vitamin B6) Biosynthesis
	Pyrroloquinoline_Quinone_biosynthesis	Pyrroloquinoline Quinone biosynthesis
	Riboflavin,_FMN_and_FAD_metabolism	Riboflavin, FMN and FAD metabolism
	Thiamin_biosynthesis	Thiamin biosynthesis
	Tocopherol_Biosynthesis	Tocopherol Biosynthesis
	Ubiquinone_Biosynthesis	Ubiquinone Biosynthesis
	p-Aminobenzoyl-Glutamate_Utilization	p-Aminobenzoyl-Glutamate Utilization
DNA  Metabolism	2-phosphoglycolate_salvage	2-phosphoglycolate salvage
	ATP-dependent_Nuclease	ATP-dependent Nuclease
	CRISPRs	CRISPRs
	DNA-replication	DNA-replication
	DNA_Helicase_of_Unknown_Function	DNA Helicase of Unknown Function
	DNA_Repair_Base_Excision	DNA Repair Base Excision
	DNA_repair,_UvrABC_system	DNA repair, UvrABC system
	DNA_repair,_bacterial	DNA repair, bacterial
	DNA_repair,_bacterial_DinG_and_relatives	DNA repair, bacterial DinG and relatives
	DNA_repair,_bacterial_MutL-MutS_system	DNA repair, bacterial MutL-MutS system
	DNA_repair,_bacterial_RecFOR_pathway	DNA repair, bacterial RecFOR pathway
	DNA_repair,_bacterial_UvrD_and_related_h*	DNA repair, bacterial UvrD and related helicases
	DNA_repair_and_recombination_eukaryotic	DNA repair and recombination eukaryotic
	DNA_replication,_archaeal	DNA replication, archaeal
	DNA_structural_proteins,_bacterial	DNA structural proteins, bacterial
	DNA_topoisomerases,_Type_I,_ATP-independ*	DNA topoisomerases, Type I, ATP-independent
	DNA_topoisomerases,_Type_II,_ATP-depende*	DNA topoisomerases, Type II, ATP-dependent
	Plasmid_replication	Plasmid replication
	Restriction-Modification_System	Restriction-Modification System
	RuvABC_plus_a_hypothetical	RuvABC plus a hypothetical
	YcfH	YcfH
Dormancy  and  Sporulation	Bacillus_biofilm_matrix_protein_componen*	Bacillus biofilm matrix protein component TasA and homologs
	Spore_germination	Spore germination
	Sporulation_Cluster_III_A	Sporulation Cluster III A
	Sporulation_gene_orphans	Sporulation gene orphans
Fatty  Acids,  Lipids,  and  Isoprenoids	Archaeal_lipids	Archaeal lipids
	Carotenoids	Carotenoids
	Fatty_Acid_Biosynthesis_FASII	Fatty Acid Biosynthesis FASII
	Glycerolipid_and_Glycerophospholipid_Met*	Glycerolipid and Glycerophospholipid Metabolism in Bacteria
	Isoprenoid_Biosynthesis	Isoprenoid Biosynthesis
	Polyhydroxybutyrate_metabolism	Polyhydroxybutyrate metabolism
	Polyprenyl_Diphosphate_Biosynthesis	Polyprenyl Diphosphate Biosynthesis
	Terpen_biosynthesis	Terpen biosynthesis
	Triacylglycerol_metabolism	Triacylglycerol metabolism
	polyprenyl_synthesis	polyprenyl synthesis
Iron  acquisition  and  metabolism	Campylobacter_Iron_Metabolism	Campylobacter Iron Metabolism
	Heme,_hemin_uptake_and_utilization_syste*	Heme, hemin uptake and utilization systems in GramPositives
	Hemin_transport_system	Hemin transport system
	Iron_acquisition_in_Vibrio	Iron acquisition in Vibrio
	Siderophore_Aerobactin	Siderophore Aerobactin
	Siderophore_Enterobactin	Siderophore Enterobactin
	Siderophore_Pyoverdine	Siderophore Pyoverdine
	Siderophore_Staphylobactin	Siderophore Staphylobactin
	Siderophore_pyochelin	Siderophore pyochelin
	Transport_of_Iron	Transport of Iron
Membrane  Transport	ABC_transporter_alkylphosphonate_(TC_3.A*	ABC transporter alkylphosphonate (TC 3.A.1.9.1)
	ABC_transporter_branched-chain_amino_aci*	ABC transporter branched-chain amino acid (TC 3.A.1.4.1)
	ABC_transporter_dipeptide_(TC_3.A.1.5.2)	ABC transporter dipeptide (TC 3.A.1.5.2)
	ABC_transporter_of_unknown_substrate_X	ABC transporter of unknown substrate X
	ABC_transporter_oligopeptide_(TC_3.A.1.5*	ABC transporter oligopeptide (TC 3.A.1.5.1)
	ABC_transporter_peptide_(TC_3.A.1.5.5)	ABC transporter peptide (TC 3.A.1.5.5)
	ABC_transporter_tungstate_(TC_3.A.1.6.2)	ABC transporter tungstate (TC 3.A.1.6.2)
	Agrobacterium_opine_transport	Agrobacterium opine transport
	Choline_Transport	Choline Transport
	Curli_production	Curli production
	ECF_class_transporters	ECF class transporters
	ESAT-6_proteins_secretion_system_in_Acti*	ESAT-6 proteins secretion system in Actinobacteria
	ESAT-6_proteins_secretion_system_in_Firm*	ESAT-6 proteins secretion system in Firmicutes
	Fructose_and_Mannose_Inducible_PTS	Fructose and Mannose Inducible PTS
	Mannose-sensitive_hemagglutinin_type_4_p*	Mannose-sensitive hemagglutinin type 4 pilus
	Na(+)_H(+)_antiporter	Na(+) H(+) antiporter
	Sodium_Hydrogen_Antiporter	Sodium Hydrogen Antiporter
	Ton_and_Tol_transport_systems	Ton and Tol transport systems
	Toxin_co-regulated_pilus	Toxin co-regulated pilus
	Transport_of_Manganese	Transport of Manganese
	Transport_of_Molybdenum	Transport of Molybdenum
	Transport_of_Nickel_and_Cobalt	Transport of Nickel and Cobalt
	Transport_of_Zinc	Transport of Zinc
	Twin-arginine_translocation_system	Twin-arginine translocation system
	Type_4_conjugative_transfer_system,_IncI*	Type 4 conjugative transfer system, IncI1 type
	Type_III_secretion_system_orphans	Type III secretion system orphans
	Type_IV_pilus	Type IV pilus
	Widespread_colonization_island	Widespread colonization island
	pVir_Plasmid_of_Campylobacter	pVir Plasmid of Campylobacter
Metabolism  of  Aromatic  Compounds	4-Hydroxyphenylacetic_acid_catabolic_pat*	4-Hydroxyphenylacetic acid catabolic pathway
	Acetophenone_carboxylase_1	Acetophenone carboxylase 1
	Anaerobic_toluene_and_ethylbenzene_degra*	Anaerobic toluene and ethylbenzene degradation
	Aromatic_Amin_Catabolism	Aromatic Amin Catabolism
	Benzoate_degradation	Benzoate degradation
	Benzoate_transport_and_degradation_clust*	Benzoate transport and degradation cluster
	Biphenyl_Degradation	Biphenyl Degradation
	Catechol_branch_of_beta-ketoadipate_path*	Catechol branch of beta-ketoadipate pathway
	Central_meta-cleavage_pathway_of_aromati*	Central meta-cleavage pathway of aromatic compound degradation
	Chloroaromatic_degradation_pathway	Chloroaromatic degradation pathway
	Cresol_degradation	Cresol degradation
	Gentisare_degradation	Gentisare degradation
	Homogentisate_pathway_of_aromatic_compou*	Homogentisate pathway of aromatic compound degradation
	N-heterocyclic_aromatic_compound_degrada*	N-heterocyclic aromatic compound degradation
	Naphtalene_and_antracene_degradation	Naphtalene and antracene degradation
	Phenylpropanoid_compound_degradation	Phenylpropanoid compound degradation
	Protocatechuate_branch_of_beta-ketoadipa*	Protocatechuate branch of beta-ketoadipate pathway
	Quinate_degradation	Quinate degradation
	Salicylate_and_gentisate_catabolism	Salicylate and gentisate catabolism
	Salicylate_ester_degradation	Salicylate ester degradation
	Toluene_degradation	Toluene degradation
	carbazol_degradation_cluster	carbazol degradation cluster
	n-Phenylalkanoic_acid_degradation	n-Phenylalkanoic acid degradation
	p-Hydroxybenzoate_degradation	p-Hydroxybenzoate degradation
	p-cymene_degradation	p-cymene degradation
Miscellaneous	Archease	Archease
	Conserved_gene_cluster_possibly_involved*	Conserved gene cluster possibly involved in RNA metabolism
	Luciferases	Luciferases
	Muconate_lactonizing_enzyme_family	Muconate lactonizing enzyme family
	Synechocystis_experimental	Synechocystis experimental
	YaaA	YaaA
	YbbK	YbbK
	ZZ_gjo_need_homes	ZZ gjo need homes
Motility  and  Chemotaxis	Archaeal_Flagellum	Archaeal Flagellum
	Bacterial_Chemotaxis	Bacterial Chemotaxis
	Flagellar_motility	Flagellar motility
	Flagellum	Flagellum
	Flagellum_in_Campylobacter	Flagellum in Campylobacter
	Rhamnolipids_in_Pseudomonas	Rhamnolipids in Pseudomonas
Nitrogen  Metabolism	Allantoin_Utilization	Allantoin Utilization
	Amidase_clustered_with_urea_and_nitrile_*	Amidase clustered with urea and nitrile hydratase functions
	Ammonia_assimilation	Ammonia assimilation
	Cyanate_hydrolysis	Cyanate hydrolysis
	Denitrification	Denitrification
	Dissimilatory_nitrite_reductase	Dissimilatory nitrite reductase
	Nitrate_and_nitrite_ammonification	Nitrate and nitrite ammonification
	Nitric_oxide_synthase	Nitric oxide synthase
	Nitrogen_fixation	Nitrogen fixation
	Nitrosative_stress	Nitrosative stress
Nucleosides  and  Nucleotides	AMP_to_3-phosphoglycerate	AMP to 3-phosphoglycerate
	Adenosyl_nucleosidases	Adenosyl nucleosidases
	De_Novo_Purine_Biosynthesis	De Novo Purine Biosynthesis
	De_Novo_Pyrimidine_Synthesis	De Novo Pyrimidine Synthesis
	Hydantoin_metabolism	Hydantoin metabolism
	Nucleoside_triphosphate_pyrophosphohydro*	Nucleoside triphosphate pyrophosphohydrolase MazG
	Nudix_proteins_(nucleoside_triphosphate_*	Nudix proteins (nucleoside triphosphate hydrolases)
	Purine_Utilization	Purine Utilization
	Purine_conversions	Purine conversions
	Purine_nucleotide_synthesis_regulator	Purine nucleotide synthesis regulator
	Pyrimidine_utilization	Pyrimidine utilization
	Ribonucleotide_reduction	Ribonucleotide reduction
	Xanthosine_utilization_(xap_region)	Xanthosine utilization (xap region)
Phages,  Prophages,  Transposable  elements	Phage_capsid_proteins	Phage capsid proteins
Phages,  Prophages,  Transposable  elements,  Plasmids	Conjugative_transposon,_Bacteroidales	Conjugative transposon, Bacteroidales
	IbrA_and_IbrB:_co-activators_of_prophage*	IbrA and IbrB: co-activators of prophage gene expression
	Integrons	Integrons
	Listeria_Pathogenicity_Island_LIPI-1_ext*	Listeria Pathogenicity Island LIPI-1 extended
	Listeria_phi-A118-like_prophages	Listeria phi-A118-like prophages
	Staphylococcal_pathogenicity_islands_SaPI	Staphylococcal pathogenicity islands SaPI
	Staphylococcal_phi-Mu50B-like_prophages	Staphylococcal phi-Mu50B-like prophages
	Tn552	Tn552
	Vibrio_pathogenicity_island	Vibrio pathogenicity island
Phosphorus  Metabolism	Alkylphosphonate_utilization	Alkylphosphonate utilization
	High_affinity_phosphate_transporter_and_*	High affinity phosphate transporter and control of PHO regulon
	Phosphate_metabolism	Phosphate metabolism
	Phosphonate_metabolism	Phosphonate metabolism
Photosynthesis	Bacterial_light-harvesting_proteins	Bacterial light-harvesting proteins
	Chlorosome	Chlorosome
	Photosystem_I	Photosystem I
	Photosystem_I-type_photosynthetic_reacti*	Photosystem I-type photosynthetic reaction center
	Photosystem_II	Photosystem II
	Photosystem_II-type_photosynthetic_react*	Photosystem II-type photosynthetic reaction center
	Phycobilisome	Phycobilisome
Potassium  metabolism	Glutathione-regulated_potassium-efflux_s*	Glutathione-regulated potassium-efflux system and associated functions
	Potassium_homeostasis	Potassium homeostasis
	pH_adaptation_potassium_efflux_system	pH adaptation potassium efflux system
Protein  Metabolism	Glycine_reductase,_sarcosine_reductase_a*	Glycine reductase, sarcosine reductase and betaine reductase
	GroEL_GroES	GroEL GroES
	Inteins	Inteins
	N-linked_Glycosylation_in_Bacteria	N-linked Glycosylation in Bacteria
	Peptidyl-prolyl_cis-trans_isomerase	Peptidyl-prolyl cis-trans isomerase
	Periplasmic_disulfide_interchange	Periplasmic disulfide interchange
	Programmed_frameshift	Programmed frameshift
	Proteasome_archaeal	Proteasome archaeal
	Proteasome_bacterial	Proteasome bacterial
	Proteasome_eukaryotic	Proteasome eukaryotic
	Protein_chaperones	Protein chaperones
	Protein_degradation	Protein degradation
	Protein_secretion_by_ABC-type_exporters	Protein secretion by ABC-type exporters
	Proteolysis_in_bacteria,_ATP-dependent	Proteolysis in bacteria, ATP-dependent
	Putative_TldE-TldD_proteolytic_complex	Putative TldE-TldD proteolytic complex
	Pyrrolysine	Pyrrolysine
	Ribosomal_protein_S12p_Asp_methylthiotra*	Ribosomal protein S12p Asp methylthiotransferase
	Ribosomal_protein_S5p_acylation	Ribosomal protein S5p acylation
	Ribosome_LSU_bacterial	Ribosome LSU bacterial
	Ribosome_LSU_chloroplast	Ribosome LSU chloroplast
	Ribosome_LSU_eukaryotic_and_archaeal	Ribosome LSU eukaryotic and archaeal
	Ribosome_LSU_mitochondrial	Ribosome LSU mitochondrial
	Ribosome_SSU_bacterial	Ribosome SSU bacterial
	Ribosome_SSU_chloroplast	Ribosome SSU chloroplast
	Ribosome_SSU_eukaryotic_and_archaeal	Ribosome SSU eukaryotic and archaeal
	Ribosome_SSU_mitochondrial	Ribosome SSU mitochondrial
	Ribosome_activity_modulation	Ribosome activity modulation
	Ribosome_biogenesis_bacterial	Ribosome biogenesis bacterial
	Selenocysteine_metabolism	Selenocysteine metabolism
	Signal_peptidase	Signal peptidase
	Thermosome,_archaeal	Thermosome, archaeal
	Trans-translation_by_stalled_ribosomes	Trans-translation by stalled ribosomes
	Translation_elongation_factor_G_family	Translation elongation factor G family
	Translation_elongation_factors_eukaryoti*	Translation elongation factors eukaryotic and archaeal
	Translation_initiation_factors_eukaryoti*	Translation initiation factors eukaryotic and archaeal
	Universal_GTPases	Universal GTPases
	rRNAs	rRNAs
	tRNA_aminoacylation,_Asp_and_Asn	tRNA aminoacylation, Asp and Asn
	tRNA_aminoacylation,_Glu_and_Gln	tRNA aminoacylation, Glu and Gln
	tRNAs	tRNAs
RNA  Metabolism	ATP-dependent_RNA_helicases,_bacterial	ATP-dependent RNA helicases, bacterial
	Exosome	Exosome
	Group_II_intron-associated_genes	Group II intron-associated genes
	Polyadenylation_bacterial	Polyadenylation bacterial
	Queuosine-Archaeosine_Biosynthesis	Queuosine-Archaeosine Biosynthesis
	RNA_3'-terminal_phosphate_cyclase	RNA 3'-terminal phosphate cyclase
	RNA_polymerase_I	RNA polymerase I
	RNA_polymerase_II	RNA polymerase II
	RNA_polymerase_III	RNA polymerase III
	RNA_polymerase_III_initiation_factors	RNA polymerase III initiation factors
	RNA_polymerase_II_initiation_factors	RNA polymerase II initiation factors
	RNA_polymerase_archaeal	RNA polymerase archaeal
	RNA_polymerase_archaeal_initiation_facto*	RNA polymerase archaeal initiation factors
	RNA_polymerase_bacterial	RNA polymerase bacterial
	RNA_polymerase_chloroplast	RNA polymerase chloroplast
	RNA_processing_and_degradation,_bacterial	RNA processing and degradation, bacterial
	Ribonuclease_H	Ribonuclease H
	Ribonuclease_P_archaeal_and_eukaryal	Ribonuclease P archaeal and eukaryal
	Ribosome_biogenesis_archaeal	Ribosome biogenesis archaeal
	Rrf2_family_transcriptional_regulators	Rrf2 family transcriptional regulators
	Spliceosome	Spliceosome
	Transcription_factors_bacterial	Transcription factors bacterial
	Transcription_factors_cyanobacterial_Rpo*	Transcription factors cyanobacterial RpoD-like sigma factors
	Transcription_initiation,_bacterial_sigm*	Transcription initiation, bacterial sigma factors
	Wyeosine-MimG_Biosynthesis	Wyeosine-MimG Biosynthesis
	tRNA_nucleotidyltransferase	tRNA nucleotidyltransferase
	tRNA_processing	tRNA processing
	tRNA_splicing	tRNA splicing
Regulation  and  Cell  signaling	Autoinducer_2_(AI-2)_transport_and_proce*	Autoinducer 2 (AI-2) transport and processing (lsrACDBFGE operon)
	Biofilm_formation_in_Staphylococcus	Biofilm formation in Staphylococcus
	Coagulation_cascade	Coagulation cascade
	CytR_regulation	CytR regulation
	DNA-binding_regulatory_proteins,_strays	DNA-binding regulatory proteins, strays
	MazEF_toxin-antitoxing_(programmed_cell_*	MazEF toxin-antitoxing (programmed cell death) system
	Murein_hydrolase_regulation_and_cell_dea*	Murein hydrolase regulation and cell death
	Orphan_regulatory_proteins	Orphan regulatory proteins
	Oxygen_and_light_sensor_PpaA-PpsR	Oxygen and light sensor PpaA-PpsR
	Pseudomonas_quinolone_signal_PQS	Pseudomonas quinolone signal PQS
	Quorum_Sensing:_Autoinducer-2_Synthesis	Quorum Sensing: Autoinducer-2 Synthesis
	Quorum_sensing_regulation_in_Pseudomonas	Quorum sensing regulation in Pseudomonas
	Regulatory_Intramembrane_Proteolysis_Pat*	Regulatory Intramembrane Proteolysis Pathways
	Sex_pheromones_in_Enterococcus_faecalis_*	Sex pheromones in Enterococcus faecalis and other Firmicutes
	SpeB-SpeF_extended_regulon	SpeB-SpeF extended regulon
	Streptococcal_Mga_Regulon	Streptococcal Mga Regulon
	Stringent_Response,_(p)ppGpp_metabolism	Stringent Response, (p)ppGpp metabolism
	Toxin-antitoxin_replicon_stabilization_s*	Toxin-antitoxin replicon stabilization systems
	Two-component_regulatory_systems_in_Camp*	Two-component regulatory systems in Campylobacter
	cAMP_signaling_in_bacteria	cAMP signaling in bacteria
Respiration	Anaerobic_respiratory_reductases	Anaerobic respiratory reductases
	Biogenesis_of_c-type_cytochromes	Biogenesis of c-type cytochromes
	Biogenesis_of_cbb3-type_cytochrome_c_oxi*	Biogenesis of cbb3-type cytochrome c oxidases
	Biogenesis_of_cytochrome_c_oxidases	Biogenesis of cytochrome c oxidases
	CO_Dehydrogenase	CO Dehydrogenase
	Carbon_monoxide_dehydrogenase_maturation*	Carbon monoxide dehydrogenase maturation factors
	Carbon_monoxide_induced_hydrogenase	Carbon monoxide induced hydrogenase
	Coenzyme_F420-H2_dehydrogenase_(methanop*	Coenzyme F420-H2 dehydrogenase (methanophenazine)
	Coenzyme_F420_hydrogenase	Coenzyme F420 hydrogenase
	Cytochrome_B6-F_complex	Cytochrome B6-F complex
	Energy-conserving_hydrogenase_(ferredoxi*	Energy-conserving hydrogenase (ferredoxin)
	F0F1-type_ATP_synthase	F0F1-type ATP synthase
	Flavocytochrome_C	Flavocytochrome C
	Formate_dehydrogenase	Formate dehydrogenase
	Formate_hydrogenase	Formate hydrogenase
	H2:CoM-S-S-HTP_oxidoreductase	H2:CoM-S-S-HTP oxidoreductase
	Hydrogenases	Hydrogenases
	Membrane-bound_Ni,_Fe-hydrogenase	Membrane-bound Ni, Fe-hydrogenase
	Methanophenazine_hydrogenase	Methanophenazine hydrogenase
	Na(+)-translocating_NADH-quinone_oxidore*	Na(+)-translocating NADH-quinone oxidoreductase and rnf-like group of electron transport complexes
	Na+_translocating_decarboxylases_and_rel*	Na+ translocating decarboxylases and related biotin-dependent enzymes
	NiFe_hydrogenase_maturation	NiFe hydrogenase maturation
	Reductive_Dechlorination	Reductive Dechlorination
	Respiratory_Complex_I	Respiratory Complex I
	Respiratory_dehydrogenases_1	Respiratory dehydrogenases 1
	Soluble_cytochromes_and_functionally_rel*	Soluble cytochromes and functionally related electron carriers
	Succinate_dehydrogenase	Succinate dehydrogenase
	Terminal_AA3-600_quinol_oxidase	Terminal AA3-600 quinol oxidase
	Terminal_cytochrome_C_oxidases	Terminal cytochrome C oxidases
	Terminal_cytochrome_O_ubiquinol_oxidase	Terminal cytochrome O ubiquinol oxidase
	Terminal_cytochrome_d_ubiquinol_oxidases	Terminal cytochrome d ubiquinol oxidases
	Terminal_cytochrome_oxidases	Terminal cytochrome oxidases
	Tetrathionate_respiration	Tetrathionate respiration
	Ubiquinone_Menaquinone-cytochrome_c_redu*	Ubiquinone Menaquinone-cytochrome c reductase complexes
	V-Type_ATP_synthase	V-Type ATP synthase
	trimethylamine_N-oxide_(TMAO)_reductase	trimethylamine N-oxide (TMAO) reductase
Secondary  Metabolism	2-isocapryloyl-3R-hydroxymethyl-gamma-bu*	2-isocapryloyl-3R-hydroxymethyl-gamma-butyrolactone and other bacterial morphogens
	Alkaloid_biosynthesis_from_L-lysine	Alkaloid biosynthesis from L-lysine
	Apigenin_derivatives	Apigenin derivatives
	Auxin_biosynthesis	Auxin biosynthesis
	Auxin_degradation	Auxin degradation
	Biflavanoid_biosynthesis	Biflavanoid biosynthesis
	Caffeic_acid_derivatives	Caffeic acid derivatives
	Cannabinoid_biosynthesis	Cannabinoid biosynthesis
	Cinnamic_Acid_Degradation	Cinnamic Acid Degradation
	Clavulanic_acid_biosynthesis	Clavulanic acid biosynthesis
	Flavanone_biosynthesis	Flavanone biosynthesis
	Lignine_biosynthesis	Lignine biosynthesis
	Octadecanoids	Octadecanoids
	Phenazine_biosynthesis	Phenazine biosynthesis
	Phenylpropanoids_general_biosynthesis	Phenylpropanoids general biosynthesis
	Phenylpropionate_Degradation	Phenylpropionate Degradation
	Phytoalexin_biosynthesis	Phytoalexin biosynthesis
	Phytosterol_biosynthesis	Phytosterol biosynthesis
	Quinolinic_acid_and_its_derivatives	Quinolinic acid and its derivatives
	Salicylic_acid_biosynthesis1	Salicylic acid biosynthesis1
	Steroid_sulfates	Steroid sulfates
	Suberine_biosynthesis	Suberine biosynthesis
	Tannin_biosynthesis	Tannin biosynthesis
Stress  Response	Acid_resistance_mechanisms	Acid resistance mechanisms
	Bacterial_hemoglobins	Bacterial hemoglobins
	Betaine_biosynthesis_from_glycine	Betaine biosynthesis from glycine
	Choline_and_Betaine_Uptake_and_Betaine_B*	Choline and Betaine Uptake and Betaine Biosynthesis
	D-tyrosyl-tRNA(Tyr)_deacylase	D-tyrosyl-tRNA(Tyr) deacylase
	Dimethylarginine_metabolism	Dimethylarginine metabolism
	Ectoine_biosynthesis_and_regulation	Ectoine biosynthesis and regulation
	Flavohaemoglobin	Flavohaemoglobin
	Glutaredoxins	Glutaredoxins
	Glutathione-dependent_pathway_of_formald*	Glutathione-dependent pathway of formaldehyde detoxification
	Glutathione:_Biosynthesis_and_gamma-glut*	Glutathione: Biosynthesis and gamma-glutamyl cycle
	Glutathione:_Non-redox_reactions	Glutathione: Non-redox reactions
	Glutathione:_Redox_cycle	Glutathione: Redox cycle
	Glutathione_analogs:_mycothiol	Glutathione analogs: mycothiol
	Glutathionylspermidine_and_Trypanothione	Glutathionylspermidine and Trypanothione
	Heat_shock_dnaK_gene_cluster_extended	Heat shock dnaK gene cluster extended
	Hfl_operon	Hfl operon
	Oxidative_stress	Oxidative stress
	Redox-dependent_regulation_of_nucleus_pr*	Redox-dependent regulation of nucleus processes
	Rubrerythrin	Rubrerythrin
	SigmaB_stress_responce_regulation	SigmaB stress responce regulation
	Sugar-phosphate_stress_regulation	Sugar-phosphate stress regulation
	Universal_stress_protein_family	Universal stress protein family
Sulfur  Metabolism	Alkanesulfonate_assimilation	Alkanesulfonate assimilation
	Alkanesulfonates_Utilization	Alkanesulfonates Utilization
	DMSP_breakdown	DMSP breakdown
	Galactosylceramide_and_Sulfatide_metabol*	Galactosylceramide and Sulfatide metabolism
	Sulfate_reduction-associated_complexes	Sulfate reduction-associated complexes
	Sulfur_oxidation	Sulfur oxidation
	Taurine_Utilization	Taurine Utilization
	Thioredoxin-disulfide_reductase	Thioredoxin-disulfide reductase
	Utilization_of_glutathione_as_a_sulphur_*	Utilization of glutathione as a sulphur source
Virulence	Type_4_secretion_and_conjugative_transfer	Type 4 secretion and conjugative transfer
Virulence,  Disease  and  Defense	Adhesins_in_Staphylococcus	Adhesins in Staphylococcus
	Adhesion_of_Campylobacter	Adhesion of Campylobacter
	Aminoglycoside_adenylyltransferases	Aminoglycoside adenylyltransferases
	Arsenic_resistance	Arsenic resistance
	Bacteriocin-like_peptides_Blp	Bacteriocin-like peptides Blp
	Beta-lactamase	Beta-lactamase
	Cholera_toxin	Cholera toxin
	Cobalt-zinc-cadmium_resistance	Cobalt-zinc-cadmium resistance
	Copper_homeostasis	Copper homeostasis
	Copper_homeostasis:_copper_tolerance	Copper homeostasis: copper tolerance
	Cytolethal_distending_toxin_of_Campyloba*	Cytolethal distending toxin of Campylobacter jejuni
	Cytolysin_and_Lipase_operon_in_Vibrio	Cytolysin and Lipase operon in Vibrio
	Fosfomycin_resistance	Fosfomycin resistance
	Listeria_surface_proteins:_Internalin-li*	Listeria surface proteins: Internalin-like proteins
	Listeria_surface_proteins:_LPXTG_motif	Listeria surface proteins: LPXTG motif
	MLST	MLST
	Mercuric_reductase	Mercuric reductase
	Mercury_resistance_operon	Mercury resistance operon
	Methicillin_resistance_in_Staphylococci	Methicillin resistance in Staphylococci
	Multidrug_Resistance,_2-protein_version_*	Multidrug Resistance, 2-protein version Found in Gram-positive bacteria
	Multidrug_Resistance,_Tripartite_Systems*	Multidrug Resistance, Tripartite Systems Found in Gram Negative Bacteria
	Multidrug_Resistance_Efflux_Pumps	Multidrug Resistance Efflux Pumps
	Multidrug_efflux_pump_in_Campylobacter_j*	Multidrug efflux pump in Campylobacter jejuni (CmeABC operon)
	Prophage-encoded_Exotoxins	Prophage-encoded Exotoxins
	Resistance_to_Vancomycin	Resistance to Vancomycin
	Resistance_to_fluoroquinolones	Resistance to fluoroquinolones
	Salmonella_invasion_locus	Salmonella invasion locus
	Streptococcus_pneumoniae_Vancomycin_Tole*	Streptococcus pneumoniae Vancomycin Tolerance Locus
	Streptococcus_pyogenes_Virulome	Streptococcus pyogenes Virulome
	Streptococcus_pyogenes_recombinatorial_z*	Streptococcus pyogenes recombinatorial zone
	Streptolysin_S_Biosynthesis_and_Transport	Streptolysin S Biosynthesis and Transport
	Streptothricin_resistance	Streptothricin resistance
	Zinc_resistance	Zinc resistance