Getting long reads (from reads library object).
command: filtlong --min_length 1000 --keep_percent 90 --target_bases 500000000 /kb/module/work/tmp/171f60de-793a-40e4-b849-0e7ea57e0fee.single.fastq > /kb/module/work/tmp/filtlong_output_e102b642-a0de-4abb-9f9a-dfd68ac1b773.fastq
Scoring long reads
98 reads (490091 bp)
174 reads (976053 bp)
283 reads (1463618 bp)
381 reads (1948083 bp)
486 reads (2434768 bp)
587 reads (2936723 bp)
701 reads (3420668 bp)
794 reads (3905055 bp)
970 reads (4393676 bp)
1090 reads (4878631 bp)
1209 reads (5366418 bp)
1312 reads (5851550 bp)
1400 reads (6337618 bp)
1505 reads (6826211 bp)
1610 reads (7314544 bp)
1714 reads (7801723 bp)
1813 reads (8298600 bp)
1933 reads (8783409 bp)
2071 reads (9268598 bp)
2230 reads (9758912 bp)
2370 reads (10242960 bp)
2473 reads (10727850 bp)
2568 reads (11214830 bp)
2676 reads (11723354 bp)
2789 reads (12209068 bp)
2903 reads (12701959 bp)
3028 reads (13189662 bp)
3140 reads (13675338 bp)
3280 reads (14171964 bp)
3443 reads (14662510 bp)
3570 reads (15149268 bp)
3667 reads (15639303 bp)
3807 reads (16127161 bp)
3909 reads (16615674 bp)
4012 reads (17104267 bp)
4152 reads (17590390 bp)
4240 reads (18076836 bp)
4373 reads (18562756 bp)
4510 reads (19046753 bp)
4636 reads (19531289 bp)
4758 reads (20020601 bp)
4861 reads (20508206 bp)
4965 reads (20995807 bp)
5070 reads (21483805 bp)
5166 reads (21976218 bp)
5274 reads (22461275 bp)
5388 reads (22946740 bp)
5472 reads (23433678 bp)
5571 reads (23919241 bp)
5707 reads (24405542 bp)
5891 reads (24889232 bp)
6031 reads (25373410 bp)
6137 reads (25860385 bp)
6222 reads (26348753 bp)
6330 reads (26837098 bp)
6434 reads (27321895 bp)
6547 reads (27813180 bp)
6672 reads (28299918 bp)
6792 reads (28783605 bp)
6923 reads (29271765 bp)
7089 reads (29758698 bp)
7205 reads (30246993 bp)
7302 reads (30732247 bp)
7414 reads (31218080 bp)
7504 reads (31707059 bp)
7630 reads (32197429 bp)
7738 reads (32684764 bp)
7870 reads (33176659 bp)
7972 reads (33661711 bp)
8086 reads (34146401 bp)
8196 reads (34631728 bp)
8294 reads (35134047 bp)
8430 reads (35619517 bp)
8548 reads (36107261 bp)
8669 reads (36591190 bp)
8764 reads (37076444 bp)
8927 reads (37563778 bp)
9028 reads (38049375 bp)
9154 reads (38541847 bp)
9281 reads (39027893 bp)
9391 reads (39520150 bp)
9537 reads (40015703 bp)
9665 reads (40499348 bp)
9764 reads (40987462 bp)
9892 reads (41487909 bp)
10053 reads (41973136 bp)
10153 reads (42457551 bp)
10223 reads (42950295 bp)
10342 reads (43436716 bp)
10454 reads (43925804 bp)
10600 reads (44412787 bp)
10692 reads (44899189 bp)
10826 reads (45385878 bp)
10925 reads (45896235 bp)
11024 reads (46402760 bp)
11137 reads (46887253 bp)
11235 reads (47375464 bp)
11356 reads (47859997 bp)
11467 reads (48343991 bp)
11567 reads (48829722 bp)
11680 reads (49315792 bp)
11845 reads (49809897 bp)
11967 reads (50297755 bp)
12071 reads (50781929 bp)
12179 reads (51290718 bp)
12317 reads (51774438 bp)
12416 reads (52260697 bp)
12506 reads (52745407 bp)
12611 reads (53229855 bp)
12698 reads (53725763 bp)
12813 reads (54213731 bp)
12953 reads (54702341 bp)
13088 reads (55189253 bp)
13197 reads (55675429 bp)
13301 reads (56159948 bp)
13415 reads (56651432 bp)
13552 reads (57137007 bp)
13646 reads (57624870 bp)
13756 reads (58117011 bp)
13872 reads (58612653 bp)
13994 reads (59098829 bp)
14165 reads (59601211 bp)
14263 reads (60090325 bp)
14376 reads (60580382 bp)
14490 reads (61066660 bp)
14594 reads (61551652 bp)
14730 reads (62035777 bp)
14846 reads (62521982 bp)
14966 reads (63013723 bp)
15090 reads (63499858 bp)
15199 reads (64010140 bp)
15287 reads (64504040 bp)
15423 reads (64988575 bp)
15551 reads (65489206 bp)
15674 reads (65979071 bp)
15787 reads (66468000 bp)
15882 reads (66955676 bp)
16002 reads (67441134 bp)
16101 reads (67925815 bp)
16236 reads (68410417 bp)
16348 reads (68898137 bp)
16459 reads (69382886 bp)
16583 reads (69867252 bp)
16732 reads (70363427 bp)
16875 reads (70848120 bp)
16999 reads (71331941 bp)
17103 reads (71817756 bp)
17219 reads (72302849 bp)
17348 reads (72786841 bp)
17480 reads (73274593 bp)
17573 reads (73769749 bp)
17702 reads (74256478 bp)
17832 reads (74741827 bp)
17930 reads (75228217 bp)
18024 reads (75713539 bp)
18171 reads (76202110 bp)
18276 reads (76689506 bp)
18375 reads (77199900 bp)
18513 reads (77688435 bp)
18640 reads (78180858 bp)
18763 reads (78673518 bp)
18927 reads (79160283 bp)
19025 reads (79651436 bp)
19155 reads (80137543 bp)
19291 reads (80622906 bp)
19399 reads (81109973 bp)
19504 reads (81595891 bp)
19637 reads (82081239 bp)
19735 reads (82566754 bp)
19846 reads (83050447 bp)
19969 reads (83536887 bp)
20134 reads (84021176 bp)
20214 reads (84507374 bp)
20309 reads (84995133 bp)
20412 reads (85481539 bp)
20512 reads (85969042 bp)
20636 reads (86453428 bp)
20736 reads (86942789 bp)
20849 reads (87429251 bp)
20940 reads (87914532 bp)
21050 reads (88400747 bp)
21221 reads (88884605 bp)
21314 reads (89370133 bp)
21399 reads (89858675 bp)
21489 reads (90346245 bp)
21604 reads (90842569 bp)
21737 reads (91330293 bp)
21840 reads (91815674 bp)
21937 reads (92300097 bp)
22050 reads (92784462 bp)
22151 reads (93394233 bp)
22343 reads (93877897 bp)
22468 reads (94362043 bp)
22554 reads (94848771 bp)
22680 reads (95340407 bp)
22825 reads (95824617 bp)
22924 reads (96309430 bp)
23037 reads (96795340 bp)
23124 reads (97283156 bp)
23280 reads (97768813 bp)
23374 reads (98255305 bp)
23480 reads (98745257 bp)
23614 reads (99251567 bp)
23709 reads (99749793 bp)
23821 reads (100234873 bp)
23922 reads (100723073 bp)
24002 reads (101214339 bp)
24142 reads (101698499 bp)
24238 reads (102183299 bp)
24363 reads (102674487 bp)
24485 reads (103173738 bp)
24578 reads (103665842 bp)
24699 reads (104156423 bp)
24780 reads (104643578 bp)
24963 reads (105132012 bp)
24963 reads (105132012 bp)
Filtering long reads
target: 94618810 bp
keeping 94620743 bp
Outputting passed long reads
Uploading filtered reads: filtlong.reads
Generating and saving report.
Filtlong results saved.
