Scheffersomyces stipitis metabolic modeling and genome analysis
Here, we share imported datasets to enable analyses in KBase narratives. We've imported the published metabolic model of Scheffersomyces stipitis (also known as Pichia stipitis), which was built, manually curated, and validated by Caspeta et al. (2012). The Scheffersomyces stipitis genome was retrieved from NCBI RefSeq (GCF_000209165.1) and was sequenced by the Joint Genome Institute (Jeffries et al., 2007).
Furthermore, genome analysis tools and datasets can be accessed at the MycoCosm portal page: https://mycocosm.jgi.doe.gov/Picst3
- Caspeta L, Shoaie S, Agren R, Nookaew I, Nielsen J. Genome-scale metabolic reconstructions of Pichia stipitis and Pichia pastoris and in silico evaluation of their potentials. BMC Syst Biol. Apr 4 2012;6:24. doi:10.1186/1752-0509-6-24
- Jeffries TW, Grigoriev IV, Grimwood J, et al. Genome sequence of the lignocellulose-bioconverting and xylose-fermenting yeast Pichia stipitis. Nat Biotechnol. 2007;25(3):319-326. doi:10.1038/nbt1290