KBase: The Department of Energy Systems Biology Knowledgebase

KBase is an open platform for comparative functional genomics and systems biology for microbes, plants and their communities, and for sharing results and methods with other scientists.

News

JGI Push to KBase Fixed

The DOE Joint Genome Institute’s (JGI) Genome Portal has a “Push to KBase” feature that lets users transfer some types of microbial reads and genome assembly data from JGI to KBase’s Narrative Interface for analysis using our apps. Recent changes to the JGI Genome Portal temporarily disabled the Push to KBase functionality. We are pleased to report that […]

KBase Workshop at ASM Microbe Conference – Register Now!

KBase will be hosting a full-day workshop at the American Society of Microbiology (ASM) Microbe Conference in Boston. Title: Genome-scale Metabolic Modeling of Environmental Isolates and Communities using the DOE Systems Biology Knowledgebase (KBase) The workshop date will be Thursday, June 16, from 8:15am-4:15pm in BCEC Meeting Room 157B. Read more about our workshop at: […]

Second Annual KBase User Meeting

44 researchers attended the Second Annual KBase User Meeting in Walnut Creek, California on March 22, 2016. After a brief overview of KBase, attendees were led through the use of the assembly, annotation and comparative genomics tools in the system and given an opportunity to try them on their own data. The next session focused […]

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Events

Jun 16 - 20, 2016
in Boston, MA

KBase will be hosting both an exhibit booth and an all-day workshop at the 2016 general meeting for the American Society for Microbiology, ASM Microbe. Workshop: Thursday, June 16, 8:15am-4:15pm, BCEC Meeting Room 157B Session 019-WS: Genome-scale Metabolic Modeling of Environmental Isolates and Communities using the DOE Systems Biology Knowledgebase (KBase) Exhibit booth: 206      

More upcoming events…