Allows users to provide RNA-seq reads and the corresponding metadata to create an RNASeqSampleSet data object.
This App allows users to select the single-end or paired-end read files and provide the metadata for a set of samples to create an RNASeqSampleSet object. Note that the user must provide reads for at least two samples.
Users need to import single-end or paired-end read objects to the Data Pane before starting this App.
It is mandatory for users to select the "Library Type", "Domain", "RNA-seq Sample and Condition Labels," and provide the "RNA-seq Sample Set" (RNASeqSampleSet object name). All replicates for the same condition must have same label.
Users can optionally fill in additional metadata information in the advanced options.
Team members who developed & deployed algorithm in KBase: Srividya Ramakrishnan, Sunita Kumari, Shinjae Yoo, Priya Ranjan, Jim Thomason, and Vivek Kumar. For questions, please contact us.
- Arkin AP, Cottingham RW, Henry CS, Harris NL, Stevens RL, Maslov S, et al. KBase: The United States Department of Energy Systems Biology Knowledgebase. Nature Biotechnology. 2018;36: 566. doi: 10.1038/nbt.4163 , https://www.nature.com/articles/nbt.4163
Module Commit: 156c9258afb4e7dd5b1edb5731e1a7ea3399272b