App Catalog
Sign Up Sign In
Create RNA-seq Sample Set With Condition Set
SetAPI

v.0.3.1

Launch

Provide RNA-seq reads and the metadata to create an RNA-seq Sample Set

This App allows the users to select the single-end or paired-end read files and provide the metadata for a set of samples to create RNASeqSampleSet object. Note that the user must provide reads for two or more samples.

Users need to import single-end or paired-end read files to the Data Pane before starting this App.

It is mandatory for users to select the "Library Type", "Domain", "RNA-seq Sample and Condition Labels" and provide the "RNA-seq Sample Set" (RNASeqSampleSet object name). All replicates for the same condition must have same label.

Users can optionally fill in additional metadata information in the advanced options.

Team members who developed & deployed algorithm in KBase: Srividya Ramakrishnan, Sunita Kumari, Shinjae Yoo, Priya Ranjan, Jim Thomason, Vivek Kumar. For questions, e-mail help@kbase.us


App Specification:

https://github.com/kbaseapps/SetAPI/tree/7285d06df783f556ea16d581f93ad93a68b96779/ui/narrative/methods/create_sample_set_with_condition_set

Module Commit: 7285d06df783f556ea16d581f93ad93a68b96779