Provide RNA-seq reads and the metadata to create an RNA-seq Sample Set
This App allows the users to select the single-end or paired-end read files and provide the metadata for a set of samples to create RNASeqSampleSet object. Note that the user must provide reads for two or more samples.
Users need to import single-end or paired-end read files to the Data Pane before starting this App.
It is mandatory for users to select the "Library Type", "Domain", "RNA-seq Sample and Condition Labels" and provide the "RNA-seq Sample Set" (RNASeqSampleSet object name). All replicates for the same condition must have same label.
Users can optionally fill in additional metadata information in the advanced options.
Team members who developed & deployed algorithm in KBase: Srividya Ramakrishnan, Sunita Kumari, Shinjae Yoo, Priya Ranjan, Jim Thomason, Vivek Kumar. For questions, please contact us.
- Arkin AP, Cottingham RW, Henry CS, Harris NL, Stevens RL, Maslov S, et al. KBase: The United States Department of Energy Systems Biology Knowledgebase. Nature Biotechnology. 2018;36: 566. doi: 10.1038/nbt.4163 , https://www.nature.com/articles/nbt.4163
Module Commit: 156c9258afb4e7dd5b1edb5731e1a7ea3399272b