Create differential expression matrix based on a given threshold cutoff (for eukaryotes only)
This App allows users to select the single-end or paired-end read files and provide the metadata for a set of samples to create an RNASeqSampleSet object. Note that the user must provide reads for two or more samples.
Users need to import single-end or paired-end read files to their Narrative before starting this App.
It is mandatory to select the "Library Type", "Domain", "RNA-seq Sample and Condition Labels" and provide the "RNA-seq Sample Set" (RNASeqSampleSet object name). All replicates for the same condition must have same label.
Users can optionally fill in additional metadata information in the advanced options.
Note: Ballgown requires at least one intron to function. Also, this app will not work on prokaryotes.
Team members who developed & deployed algorithm in KBase: Srividya Ramakrishnan, Sunita Kumari, Shinjae Yoo, Priya Ranjan, Jim Thomason, Vivek Kumar, Arfath Pasha. For questions, please contact us.
Module Commit: 93af4c84c346641fd1b3cfa53f26856df07ade83