Nitrogen

Hydrogen

Oxygen

Carbon Fixation

C1 Compounds

Methane

Carbon Monoxide

Sulfur

Nitriles

Urea

Selenium

Metals

Arsenic

Halogenated Compounds

amoA

amoB

amoC

hzoA

hzsA

ANFD

anfK_nitrog

anfG_nitrog

nifD

nifK

nifH

VNFD

vnfK_nitrog

vnfG_nitrog

napA

napB

narG

norB

norC

nxrA

nxrB

cyt_c552_large_NrFA

cyt_c552_small_NrfH

nirB

nirD

nirK

nirS

nrfD

nosD

nosZ

octR

FeFe_hydrog_A

FeFe_hydrog_B1

NiFe_hydrog_1

NiFe_hydrog_2a

NiFe_hydrog_2b

NiFe_hydrog_3a

NiFe_hydrog_3b

NiFe_hydrog_3c

NiFe_hydrog_3d

NiFe_hydrog_4

qoxA

qoxB

cydA

cydB

cyoA

cyoD

cyoE

coxA

coxB

ccoN

ccoO

ccoP

rubisco_form_I

rubisco_form_II

rubisco_form_II-III

rubisco_form_III

aclA

aclB

codh_catalytic

codhC_beta

codhD_delta

fae

fdhA_non_GSH

one_C_fhcD

one_C_mch

adh_III_F_hyde

fghA_ester_D

mycoS_dep_FDH

fdh-alpha

fdh-beta

fdh-gamma

NDMA_methanol

pqq

madA

madB

pmoA

pmoB

pmoC

mmoB

mmoD

mcrA

mcrB

mcrG

coxL

coxM

coxS

aprA

asrA

asrB

asrC

cysC

cysN

sat

fcc

sqr

dsrD

dsrA

dsrB

sor

sulfur_dioxygenase

phsA

soxB

soxC

soxY

nthA

nthB

ureA

ureB

ureC

Se_sel_red_Mo

ygfK

ygfM

mtrA

mtrC

arsC

ars_reduc_gluta

arsC_pI258_fam

arsenite_ox_L

arsenite_ox_S

Chlorite_dismutase

HAD_type_II

RDH

pcrA

pcrB

Field_2_concoct_bin.002.fasta.RAST

ASW-SO4_5_concoct_bin.006.fasta.RAST

ASW-SO4_2_metabat_bin.010.fasta.RAST

ASW_5_maxbin_Bin.002.fasta.RAST

ASW_4_metabat_bin.013.fasta.RAST

ASW_4_concoct_bin.031.fasta.RAST

ASW_4_concoct_bin.030.fasta.RAST

SO4_4_metabat_bin.017.fasta.RAST

Control_3_metabat_bin.016.fasta.RAST

ASW_5_metabat_bin.007.fasta.RAST

Field_4_metabat_bin.012.fasta.RAST

ASW_4_maxbin_Bin.002.fasta.RAST

ASW_4_metabat_bin.019.fasta.RAST

ASW_4_metabat_bin.014.fasta.RAST

ASW-SO4_5_maxbin_Bin.001.fasta.RAST

ASW_5_maxbin_Bin.010.fasta.RAST

ASW_4_metabat_bin.015.fasta.RAST

SO4_2_metabat_bin.024.fasta.RAST

ASW_4_metabat_bin.020.fasta.RAST

KEY
Nitrogen
amoA	TIGR03080 - methane monooxygenase/ammonia monooxygenase, subunit A
amoB	TIGR03079 - methane monooxygenase/ammonia monooxygenase, subunit B
amoC	TIGR03078 - methane monooxygenase/ammonia monooxygenase, subunit C
hzoA	Custom Model - Anammox
hzsA	Custom Model - Anammox
ANFD	TIGR01861 - nitrogenase iron-iron protein, alpha chain
anfK_nitrog	TIGR02931 - Fe-only nitrogenase, beta subunit
anfG_nitrog	TIGR02929 - Fe-only nitrogenase, delta subunit
nifD	TIGR01282 - nitrogenase molybdenum-iron protein alpha chain
nifK	TIGR01286 - nitrogenase molybdenum-iron protein beta chain
nifH	TIGR01287 - nitrogenase iron protein
VNFD	TIGR01860 - nitrogenase vanadium-iron protein, alpha chain
vnfK_nitrog	TIGR02932 - V-containing nitrogenase, beta subunit
vnfG_nitrog	TIGR02930 - V-containing nitrogenase, delta subunit
napA	TIGR01706 - periplasmic nitrate reductase, large subunit
napB	PF03892 - Nitrate reductase cytochrome c-type subunit (NapB)
narG	TIGR01580 - nitrate reductase, alpha subunit
norB	Custom Model - Nitric oxide reduction
norC	Custom Model - Nitric oxide reduction
nxrA	Custom Model - Nitrite oxidation
nxrB	Custom Model - Nitrite oxidation
cyt_c552_large_NrFA	PF02335 - Cytochrome c552
cyt_c552_small_NrfH	TIGR03153 - cytochrome c nitrite reductase, small subunit
nirB	TIGR02374 - nitrite reductase [NAD(P)H], large subunit
nirD	TIGR02378 - nitrite reductase [NAD(P)H], small subunit
nirK	TIGR02376 - nitrite reductase, copper-containing
nirS	Custom Model - Nitrite reduction
nrfD	TIGR03148 - cytochrome c nitrite reductase, NrfD subunit
nosD	PF05048 - Periplasmic copper-binding protein (NosD)
nosZ	TIGR04246 - nitrous-oxide reductase, Sec-dependent
octR	TIGR04315 - octaheme c-type cytochrome - Shewanella-type, tetrathionate reductase family
Hydrogen
FeFe_hydrog_A	TIGR02512 - [FeFe] hydrogenase, group A
FeFe_hydrog_B1	TIGR04105 - [FeFe] hydrogenase, group B1/B3
NiFe_hydrog_1	Custom Model - Ni-Fe Hydrogenase
NiFe_hydrog_2a	Custom Model - Ni-Fe Hydrogenase
NiFe_hydrog_2b	Custom Model - Ni-Fe Hydrogenase
NiFe_hydrog_3a	Custom Model - Ni-Fe Hydrogenase
NiFe_hydrog_3b	Custom Model - Ni-Fe Hydrogenase
NiFe_hydrog_3c	Custom Model - Ni-Fe Hydrogenase
NiFe_hydrog_3d	Custom Model - Ni-Fe Hydrogenase
NiFe_hydrog_4	Custom Model - Ni-Fe Hydrogenase
Oxygen
qoxA	TIGR01432 - cytochrome aa3 quinol oxidase, subunit II
qoxB	TIGR02882 - cytochrome aa3 quinol oxidase, subunit I
cydA	PF01654 - Cytochrome bd terminal oxidase subunit I
cydB	TIGR00203 - cytochrome d ubiquinol oxidase, subunit II
cyoA	TIGR01433 - ubiquinol oxidase, subunit II
cyoD	TIGR02847 - cytochrome o ubiquinol oxidase subunit IV
cyoE	TIGR01473 - protoheme IX farnesyltransferase
coxA	TIGR02891 - cytochrome c oxidase, subunit I
coxB	TIGR02866 - cytochrome c oxidase, subunit II
ccoN	TIGR00780 - cytochrome c oxidase, cbb3-type, subunit I
ccoO	TIGR00781 - cytochrome c oxidase, cbb3-type, subunit II
ccoP	TIGR00782 - cytochrome c oxidase, cbb3-type, subunit III
Carbon Fixation
rubisco_form_I	Custom Model - Rubisco Form I
rubisco_form_II	Custom Model - Rubisco Form II
rubisco_form_II-III	Custom Model - Rubisco Form II-III
rubisco_form_III	Custom Model - Rubisco Form III
aclA	Custom Model - Reverse TCA Cycle aclA
aclB	Custom Model - Reverse TCA Cycle aclB
codh_catalytic	TIGR01702 - carbon-monoxide dehydrogenase, catalytic subunit
codhC_beta	TIGR00316 - CO dehydrogenase/CO-methylating acetyl-CoA synthase complex, beta subunit
codhD_delta	TIGR00381 - CO dehydrogenase/acetyl-CoA synthase, delta subunit
C1 Compounds
fae	TIGR03126 - formaldehyde-activating enzyme
fdhA_non_GSH	TIGR02819 - formaldehyde dehydrogenase, glutathione-independent
one_C_fhcD	TIGR03119 - formylmethanofuran--tetrahydromethanopterin N-formyltransferase
one_C_mch	TIGR03120 - methenyltetrahydromethanopterin cyclohydrolase
adh_III_F_hyde	TIGR02818 - S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase
fghA_ester_D	TIGR02821 - S-formylglutathione hydrolase
mycoS_dep_FDH	TIGR03451 - S-(hydroxymethyl)mycothiol dehydrogenase
fdh-alpha	TIGR01591 - formate dehydrogenase, alpha subunit
fdh-beta	TIGR01582 - formate dehydrogenase, beta subunit
fdh-gamma	TIGR01583 - formate dehydrogenase, gamma subunit
NDMA_methanol	TIGR04266 - NDMA-dependent methanol dehydrogenase
pqq	methanol dehydrogenase (EC 1.1.2.7)
madA	TIGR02659 - methylamine dehydrogenase (amicyanin) light chain
madB	TIGR02658 - methylamine dehydrogenase (amicyanin) heavy chain
Methane
pmoA	TIGR03080 - methane monooxygenase/ammonia monooxygenase, subunit A
pmoB	TIGR03079 - methane monooxygenase/ammonia monooxygenase, subunit B
pmoC	TIGR03078 - methane monooxygenase/ammonia monooxygenase, subunit C
mmoB	PF02406 - MmoB/DmpM family
mmoD	TIGR04550 - soluble methane monooxygenase-binding protein MmoD
mcrA	TIGR03256 - methyl-coenzyme M reductase, alpha subunit
mcrB	TIGR03257 - methyl-coenzyme M reductase, beta subunit
mcrG	TIGR03259 - methyl-coenzyme M reductase, gamma subunit
Carbon Monoxide
coxL	TIGR02416 - carbon-monoxide dehydrogenase, large subunit
coxM	Custom Model - CO oxidation coxM
coxS	Custom Model - CO oxidation coxS
Sulfur
aprA	TIGR02061 - adenylylsulfate reductase, alpha subunit
asrA	TIGR02910 - sulfite reductase, subunit A
asrB	TIGR02911 - sulfite reductase, subunit B
asrC	TIGR02912 - sulfite reductase, subunit C
cysC	TIGR00455 - adenylyl-sulfate kinase
cysN	TIGR02034 - sulfate adenylyltransferase, large subunit
sat	TIGR00339 - sulfate adenylyltransferase
fcc	PF09242 - Flavocytochrome c sulfide dehydrogenase, flavin-binding
sqr	Custom Model - Sulfide oxidation
dsrD	PF08679 - Dissimilatory sulfite reductase D (DsrD)
dsrA	TIGR02064 - sulfite reductase, dissimilatory-type alpha subunit
dsrB	TIGR02066 - sulfite reductase, dissimilatory-type beta subunit
sor	PF07682 - Sulfur oxygenase reductase
sulfur_dioxygenase	Custom Model - Sulfur oxidation
phsA	Custom Model - Thiosulfate disproportionation
soxB	TIGR04486 - thiosulfohydrolase SoxB
soxC	TIGR04555 - sulfite dehydrogenase
soxY	TIGR04488 - thiosulfate oxidation carrier protein SoxY
Nitriles
nthA	TIGR01323 - nitrile hydratase, alpha subunit
nthB	TIGR03888 - nitrile hydratase, beta subunit
Urea
ureA	TIGR00193 - urease, gamma subunit
ureB	TIGR00192 - urease, beta subunit
ureC	TIGR01792 - urease, alpha subunit
Selenium
Se_sel_red_Mo	TIGR03313 - probable selenate reductase, molybdenum-binding subunit
ygfK	TIGR03315 - putative selenate reductase, YgfK subunit
ygfM	TIGR03312 - probable selenate reductase, FAD-binding subunit
Metals
mtrA	TIGR03507 - decaheme c-type cytochrome, OmcA/MtrC family
mtrC	TIGR03509 - decaheme-associated outer membrane protein, MtrB/PioB family
Arsenic
arsC	TIGR00014 - arsenate reductase (glutaredoxin)
ars_reduc_gluta	TIGR02689 - glutathione-glutaredoxin_type
arsC_pI258_fam	TIGR02691 - arsenate reductase (thioredoxin)
arsenite_ox_L	TIGR02693 - arsenite oxidase, large subunit
arsenite_ox_S	TIGR02694 - arsenite oxidase, small subunit
Halogenated Compounds
Chlorite_dismutase	PF06778 - chlorite dismutase
HAD_type_II	TIGR01428 - haloacid dehalogenase, type II
RDH	TIGR02486 - reductive dehalogenase
pcrA	TIGR03479 - DMSO reductase family type II enzyme, molybdopterin subunit
pcrB	TIGR03478 - DMSO reductase family type II enzyme, iron-sulfur subunit