Applications | Magnitude |
---|---|
Read Import, Trimming, Quality Check, and Subsampling | Hours |
Taxonomy Classification | Hours |
Contig Assembly | Days |
Assembly Comparison | Minutes |
Binning Contigs | Hours |
Quality Assessment of Bins | Minutes |
Bin Extraction | Minutes |
Microbial Assembly Annotation | Minutes |
Genome Insertion into Species Tree | Minutes |
Metabolic Model Build | Minutes |
Value | Definition | Further Explanation |
---|---|---|
N50 | The sequence length of the shortest contig at 50% of the total assembly length. | About half of all assembled bases will be contained in all contigs (ordered from longest to shortest) longer than the N50 contig and also shorter than the N50 contig. |
L50 | the smallest number of contigs whose length sum makes up half of genome size. | A quantity of contigs, not the length of a contig or set of contigs. |
Nx | The sequence length of the shortest contig at x% of the total assembly length. | Common Nx are N50, N75, and N90 |
Lx | The smallest number of contigs whose length sum makes up x% of the genome size. | Common Lx are L50, L75, and L90 |
NG50 | The sequence length of the shortest contig at 50% of the known genome length. | An estimated genome length is sometimes used. |